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Program > Detailed program
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Thu. 29 | Fri. 30 |
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09:00
10:00
11:00
12:00
13:00
14:00
15:00
16:00
17:00
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9:00 - 9:30 (30min)
Registration
 Galerie des amphis
9:30 - 9:45 (15min)
Opening presentation
Amphi H of CLV
Caroline Bazzoli
9:45 - 11:10 (1h25)
Environmental omics
Amphi H of CLV
› DNA studies from lake sediments: what we know and what we want to know
- Laura Parducci, Sapienza - University of Rome
09:45-10:40 (55min)
11:10 - 11:45 (35min)
Coffee break
Galerie des amphis
11:45 - 12:45 (1h)
Environmental omics
Amphi H of CLV
› Investigating metabolisms of microbial communities from metagenomics and metabarcoding data
- Arnaud Belcour, Inria
11:45-12:15 (30min)
› Unsupervised detection and fitness estimation of emerging SARS-CoV-2 variants: Application to wastewater samples (ANRS0160)
- Alexandra Lefebvre, Laboratoire Jacques-Louis Lions, Centre interdisciplinaire de recherche en biologie
12:15-12:30 (15min)
› Inference after human genetic clustering
- Javier González-Delgado, Ecole Nationale de la Statistique et de l'Analyse de l'Information [Bruz] - Simon Gravel, Department of Human Genetics, McGill University
12:30-12:45 (15min)
12:45 - 14:00 (1h15)
Lunch break
14:00 - 15:40 (1h40)
Missing values and data generation
Amphi H of CLV
Thomas Burger
› Minimal Libraries and Synthetic Augmentation of CRISPR-Cas9 Screens for Drug Target Discovery
- Emanuel Gonçalves, Instituto Superior Técnico (IST) - University of Lisbon
14:00-14:55 (55min)
› Generative methods for handling missing values
- Aude Sportisse, CNRS
14:55-15:25 (30min)
› Inferring cellular heterogeneity with mixture models for DNA methylation rates
- Hugo Barbot, Institut de Recherche Mathématique de Rennes
15:25-15:40 (15min)
15:40 - 15:50 (10min)
Highlights - posters
Amphi H of CLV
Vincent Brault
› Reassessing APOBEC3-signature mutation localization in MPXV shows no significant enrichment in predicted cruciform structures
- Kazanov Marat, Sabanci University - Fedor Kazanov, National Research University Higher School of Economics [Moscow]
15:40-15:41 (01min)
› Network-based analysis of genome-wide biobank data boosts discovery of genetic associations in psoriasis
- Aguirre Samboní Giann Karlo, Mines Paris - PSL (École nationale supérieure des mines de Paris)
15:41-15:42 (01min)
› Towards a Common Transcriptional Signature of Vaccination : Robustness of a Comparative Study of 13 Vaccines
- Arthur Hughes, Univ. Bordeaux, INSERM, Inria, BPH, U1219, F-33000 Bordeaux, France, Vaccine Research Institute [Créteil, France]
15:42-15:43 (01min)
› Estimation of the false identification transfer rate in multi-sample proteomic analyses
- Alicia Lionneton, Etude de la dynamique des protéomes
15:43-15:44 (01min)
› Maximum Mean Discrepancy as a Similarity Metric between experimental and theoretical spectra in proteomics
- Nicola De Simone, Etude de la dynamique des protéomes
15:44-15:45 (01min)
› Exploring genome-wide association between chromatin structure and gene expression: a Mixture of scalar-on-function regression coupled to random forest classification
- Mathilde Bruguet, Institut Agro , Irmar UMR 6625 CNRS
15:45-15:46 (01min)
› DeCovarT: Network-Driven Deconvolution of Transcriptomics data to reveal organoid Cellular Heterogeneity
- Bastien Chassagnol, Marseille medical genetics - Centre de génétique médicale de Marseille
15:46-15:47 (01min)
› Cutting-edge proteomics for diagnosis and stratification of patients suffering from sepsis
- Salem Al Siblani, Sciences Chimiques et Biologiques pour la Santé, Laboratoire Innovations technologiques pour la Détection et le Diagnostic
15:47-15:48 (01min)
› Spreading of methylation of transposable elements in A.Thaliana
- Ekaterina Antonenko, Centre de Bioinformatique, Institut Curie, Oncologie Computationnelle (U1331)
15:48-15:49 (01min)
› Epigenetic time series analysis
- Kossi julien Kowou, UMR 1388 GenPhySE
15:49-15:50 (01min)
15:50 - 17:00 (1h10)
Posters and Coffee break
Galerie des amphis
15:50 - 17:00 (1h10)
Posters
Galerie des amphis
› On the Methodological difficulties of analyzing the association between compositional microbiome data and outcomes: An example from an HIV study.
- Antonin Colajanni, Bordeaux population health, Laboratoire Bordelais de Recherche en Informatique
15:50-15:51 (01min)
› PangenePro: an automated pipeline for rapid identification and classification of gene family members
- Kinza Fatima, University of California [Riverside] - Muhammad Tahir ul Qamar, Government College University of Faisalabad
15:50-15:51 (01min)
› Toward Reliable Graph Analysis: Uncertainty Quantification for fMRI Connectivity
- Alice Chevaux, Laboratoire Jean Kuntzmann
15:50-15:51 (01min)
› How to boost omics biology research using generative artificial intelligence tools while avoiding the pitfalls of hallucinations
- Thomas Burger, CEA Grenoble
15:50-15:51 (01min)
› Empirical simulation study for differential structure estimation of graphical models
- Blanche Francheterre, Mathématiques et Informatique Appliquées
15:50-15:51 (01min)
› Towards off-the-grid demultiplexing of LC-MS/MS data
- Gowtham Sankarananth Seenivasaharagavan, GIPSA Pôle Géométrie, Apprentissage, Information et Algorithmes, CEA Grenoble
15:50-15:51 (01min)
› Hierarchical Spatial Modeling of Hill-Based Soil Bacterial Diversity Across Sub-Saharan Africa Using MEM-Constrained Mixed Models
- Anicet Ebou, Institut National Polytechnique Yamoussoukro
15:50-15:51 (01min)
17:00 - 17:45 (45min)
Missing values and data generation
Amphi H of CLV
Thomas Burger
› From Missing Intensities to Uncertainty: A Conjugate Bayesian Framework for Differential Proteomics
- Marie Chion, University of Cambridge
17:00-17:30 (30min)
› Nucleotide-level RNA-Seq data augmentation based on a variational Bayesian framework
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17:30-17:45 (15min)
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9:00 - 10:40 (1h40)
Next generation hypothesis testing
Amphi H of CLV
Pierre Neuvial
› Comparative analysis of 3D genomic data
- Nathalie Vialaneix, INRAE
09:00-09:55 (55min)
› True discovery guarantees in differential gene expression analysis
- Anna Vesely, University of Bologna
09:55-10:25 (30min)
› Kernel Testing for Spatially Variable Gene Detection
- Lucy Attwood, Laboratoire de biologie et modélisation de la cellule
10:25-10:40 (15min)
10:40 - 11:15 (35min)
Coffee break
Galerie des amphis
11:15 - 12:30 (1h15)
Next generation hypothesis testing
Amphi H of CLV
Pierre Neuvial
› Statistical tests for bivariate spatial association in multi-omics data
- Stijn Hawinkel, Department of Plant Biotechnology and Bioinformatics, Ghent University, VIB center for Plant Systems Biology
11:15-11:30 (15min)
› Composite hypothesis testing procedure for the integration of multiple GWAS summary statistics
- Annaïg De Walsche, Institut Pasteur
11:30-12:00 (30min)
› Post-clustering inference: practical limitations for application to scRNA-seq data-analysis
- Boris Hejblum, Inserm Bordeaux Population Health research center U1219
12:00-12:30 (30min)
12:30 - 13:45 (1h15)
Lunch
13:45 - 15:25 (1h40)
E-values
Amphi H of CLV
Tristan Mary-Huard
› Bringing Closure to False Discovery Rate Control: A General Principle for Multiple Testing
- Jelle Goeman, Leiden University
13:45-14:40 (55min)
› Robust Confidence Intervals for Generalized Linear Models with an application to RNA-Sequencing Data
- Andrea Panarotto, Università degli Studi di Padova = University of Padua
14:40-14:55 (15min)
› High-Dimensional Linear Model Inference with Conditional Resampling for Gene Discovery
- Daniela Corbetta, Department of Statistical Sciences, University of Padova
14:55-15:10 (15min)
› Variable selection in transcriptomics data using knockoffs in a classification framework
- Julie Cartier, Centre de Bioinformatique, Institut Curie, Oncologie Computationnelle (U1331)
15:10-15:25 (15min)
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