Statistical Methods for Post Genomic Data 2026

9:00 - 9:30 (30min)

Registration

Galerie des amphis

9:30 - 9:45 (15min)

Opening presentation

Amphi H of CLV

Caroline Bazzoli

9:45 - 11:10 (1h25)

Environmental omics

Amphi H of CLV

› DNA studies from lake sediments: what we know and what we want to know - Laura Parducci, Sapienza - University of Rome 09:45-10:40 (55min)

11:10 - 11:45 (35min)

Coffee break

Galerie des amphis

11:45 - 12:45 (1h)

Environmental omics

Amphi H of CLV

› Investigating metabolisms of microbial communities from metagenomics and metabarcoding data - Arnaud Belcour, Inria 11:45-12:15 (30min)

› Unsupervised detection and fitness estimation of emerging SARS-CoV-2 variants: Application to wastewater samples (ANRS0160) - Alexandra Lefebvre, Laboratoire Jacques-Louis Lions, Centre interdisciplinaire de recherche en biologie 12:15-12:30 (15min)

› Inference after human genetic clustering - Javier González-Delgado, Ecole Nationale de la Statistique et de l'Analyse de l'Information [Bruz] - Simon Gravel, Department of Human Genetics, McGill University 12:30-12:45 (15min)

12:45 - 14:00 (1h15)

Lunch break

14:00 - 15:40 (1h40)

Missing values and data generation

Amphi H of CLV

Thomas Burger

› Minimal Libraries and Synthetic Augmentation of CRISPR-Cas9 Screens for Drug Target Discovery - Emanuel Gonçalves, Instituto Superior Técnico (IST) - University of Lisbon 14:00-14:55 (55min)

› Generative methods for handling missing values - Aude Sportisse, CNRS 14:55-15:25 (30min)

› Inferring cellular heterogeneity with mixture models for DNA methylation rates - Hugo Barbot, Institut de Recherche Mathématique de Rennes 15:25-15:40 (15min)

15:40 - 15:50 (10min)

Highlights - posters

Amphi H of CLV

Vincent Brault

› Reassessing APOBEC3-signature mutation localization in MPXV shows no significant enrichment in predicted cruciform structures - Kazanov Marat, Sabanci University - Fedor Kazanov, National Research University Higher School of Economics [Moscow] 15:40-15:41 (01min)

› Network-based analysis of genome-wide biobank data boosts discovery of genetic associations in psoriasis - Aguirre Samboní Giann Karlo, Mines Paris - PSL (École nationale supérieure des mines de Paris) 15:41-15:42 (01min)

› Towards a Common Transcriptional Signature of Vaccination : Robustness of a Comparative Study of 13 Vaccines - Arthur Hughes, Univ. Bordeaux, INSERM, Inria, BPH, U1219, F-33000 Bordeaux, France, Vaccine Research Institute [Créteil, France] 15:42-15:43 (01min)

› Estimation of the false identification transfer rate in multi-sample proteomic analyses - Alicia Lionneton, Etude de la dynamique des protéomes 15:43-15:44 (01min)

› Maximum Mean Discrepancy as a Similarity Metric between experimental and theoretical spectra in proteomics - Nicola De Simone, Etude de la dynamique des protéomes 15:44-15:45 (01min)

› Exploring genome-wide association between chromatin structure and gene expression: a Mixture of scalar-on-function regression coupled to random forest classification - Mathilde Bruguet, Institut Agro , Irmar UMR 6625 CNRS 15:45-15:46 (01min)

› DeCovarT: Network-Driven Deconvolution of Transcriptomics data to reveal organoid Cellular Heterogeneity - Bastien Chassagnol, Marseille medical genetics - Centre de génétique médicale de Marseille 15:46-15:47 (01min)

› Cutting-edge proteomics for diagnosis and stratification of patients suffering from sepsis - Salem Al Siblani, Sciences Chimiques et Biologiques pour la Santé, Laboratoire Innovations technologiques pour la Détection et le Diagnostic 15:47-15:48 (01min)

› Spreading of methylation of transposable elements in A.Thaliana - Ekaterina Antonenko, Centre de Bioinformatique, Institut Curie, Oncologie Computationnelle (U1331) 15:48-15:49 (01min)

› Epigenetic time series analysis - Kossi julien Kowou, UMR 1388 GenPhySE 15:49-15:50 (01min)

15:50 - 17:00 (1h10)

Posters and Coffee break

Galerie des amphis

15:50 - 17:00 (1h10)

Posters

Galerie des amphis

› On the Methodological difficulties of analyzing the association between compositional microbiome data and outcomes: An example from an HIV study. - Antonin Colajanni, Bordeaux population health, Laboratoire Bordelais de Recherche en Informatique 15:50-15:51 (01min)

› PangenePro: an automated pipeline for rapid identification and classification of gene family members - Kinza Fatima, University of California [Riverside] - Muhammad Tahir ul Qamar, Government College University of Faisalabad 15:50-15:51 (01min)

› Toward Reliable Graph Analysis: Uncertainty Quantification for fMRI Connectivity - Alice Chevaux, Laboratoire Jean Kuntzmann 15:50-15:51 (01min)

› How to boost omics biology research using generative artificial intelligence tools while avoiding the pitfalls of hallucinations - Thomas Burger, CEA Grenoble 15:50-15:51 (01min)

› Empirical simulation study for differential structure estimation of graphical models - Blanche Francheterre, Mathématiques et Informatique Appliquées 15:50-15:51 (01min)

› Towards off-the-grid demultiplexing of LC-MS/MS data - Gowtham Sankarananth Seenivasaharagavan, GIPSA Pôle Géométrie, Apprentissage, Information et Algorithmes, CEA Grenoble 15:50-15:51 (01min)

› Hierarchical Spatial Modeling of Hill-Based Soil Bacterial Diversity Across Sub-Saharan Africa Using MEM-Constrained Mixed Models - Anicet Ebou, Institut National Polytechnique Yamoussoukro 15:50-15:51 (01min)

17:00 - 17:45 (45min)

Missing values and data generation

Amphi H of CLV

Thomas Burger

› From Missing Intensities to Uncertainty: A Conjugate Bayesian Framework for Differential Proteomics - Marie Chion, University of Cambridge 17:00-17:30 (30min)

› Nucleotide-level RNA-Seq data augmentation based on a variational Bayesian framework - 17:30-17:45 (15min)

Program > Detailed program