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09:00 - 09:30
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Registration (Galerie des amphis) |
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09:30 - 09:45
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Opening presentation (Amphi H of CLV) - Caroline Bazzoli |
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09:45 - 11:10
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Environmental omics (Amphi H of CLV) |
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09:45 - 10:40 |
› DNA studies from lake sediments: what we know and what we want to know - Laura Parducci, Sapienza - University of Rome |
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11:10 - 11:45
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Coffee break (Galerie des amphis) |
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11:45 - 12:45
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Environmental omics (Amphi H of CLV) |
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11:45 - 12:15 |
› Investigating metabolisms of microbial communities from metagenomics and metabarcoding data - Arnaud Belcour, Inria |
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12:15 - 12:30 |
› Unsupervised detection and fitness estimation of emerging SARS-CoV-2 variants: Application to wastewater samples (ANRS0160) - Alexandra Lefebvre, Laboratoire Jacques-Louis Lions, Centre interdisciplinaire de recherche en biologie |
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12:30 - 12:45 |
› Inference after human genetic clustering - Javier González-Delgado, Ecole Nationale de la Statistique et de l'Analyse de l'Information [Bruz] - Simon Gravel, Department of Human Genetics, McGill University |
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12:45 - 14:00
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Lunch break |
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14:00 - 15:40
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Missing values and data generation (Amphi H of CLV) - Thomas Burger |
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14:00 - 14:55 |
› Minimal Libraries and Synthetic Augmentation of CRISPR-Cas9 Screens for Drug Target Discovery - Emanuel Gonçalves, Instituto Superior Técnico (IST) - University of Lisbon |
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14:55 - 15:25 |
› Generative methods for handling missing values - Aude Sportisse, CNRS |
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15:25 - 15:40 |
› Inferring cellular heterogeneity with mixture models for DNA methylation rates - Hugo Barbot, Institut de Recherche Mathématique de Rennes |
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15:40 - 15:50
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Highlights - posters (Amphi H of CLV) - Vincent Brault |
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15:40 - 15:41 |
› Reassessing APOBEC3-signature mutation localization in MPXV shows no significant enrichment in predicted cruciform structures - Kazanov Marat, Sabanci University - Fedor Kazanov, National Research University Higher School of Economics [Moscow] |
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15:41 - 15:42 |
› Network-based analysis of genome-wide biobank data boosts discovery of genetic associations in psoriasis - Aguirre Samboní Giann Karlo, Mines Paris - PSL (École nationale supérieure des mines de Paris) |
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15:42 - 15:43 |
› Towards a Common Transcriptional Signature of Vaccination : Robustness of a Comparative Study of 13 Vaccines - Arthur Hughes, Univ. Bordeaux, INSERM, Inria, BPH, U1219, F-33000 Bordeaux, France, Vaccine Research Institute [Créteil, France] |
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15:43 - 15:44 |
› Estimation of the false identification transfer rate in multi-sample proteomic analyses - Alicia Lionneton, Etude de la dynamique des protéomes |
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15:44 - 15:45 |
› Maximum Mean Discrepancy as a Similarity Metric between experimental and theoretical spectra in proteomics - Nicola De Simone, Etude de la dynamique des protéomes |
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15:45 - 15:46 |
› Exploring genome-wide association between chromatin structure and gene expression: a Mixture of scalar-on-function regression coupled to random forest classification - Mathilde Bruguet, Institut Agro , Irmar UMR 6625 CNRS |
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15:46 - 15:47 |
› DeCovarT: Network-Driven Deconvolution of Transcriptomics data to reveal organoid Cellular Heterogeneity - Bastien Chassagnol, Marseille medical genetics - Centre de génétique médicale de Marseille |
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15:47 - 15:48 |
› Cutting-edge proteomics for diagnosis and stratification of patients suffering from sepsis - Salem Al Siblani, Sciences Chimiques et Biologiques pour la Santé, Laboratoire Innovations technologiques pour la Détection et le Diagnostic |
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15:48 - 15:49 |
› Spreading of methylation of transposable elements in A.Thaliana - Ekaterina Antonenko, Centre de Bioinformatique, Institut Curie, Oncologie Computationnelle (U1331) |
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15:49 - 15:50 |
› Epigenetic time series analysis - Kossi julien Kowou, UMR 1388 GenPhySE |
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15:50 - 17:00
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Posters and Coffee break (Galerie des amphis) |
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15:50 - 17:00
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Posters (Galerie des amphis) |
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15:50 - 15:51 |
› On the Methodological difficulties of analyzing the association between compositional microbiome data and outcomes: An example from an HIV study. - Antonin Colajanni, Bordeaux population health, Laboratoire Bordelais de Recherche en Informatique |
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15:50 - 15:51 |
› PangenePro: an automated pipeline for rapid identification and classification of gene family members - Kinza Fatima, University of California [Riverside] - Muhammad Tahir ul Qamar, Government College University of Faisalabad |
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15:50 - 15:51 |
› Toward Reliable Graph Analysis: Uncertainty Quantification for fMRI Connectivity - Alice Chevaux, Laboratoire Jean Kuntzmann |
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15:50 - 15:51 |
› How to boost omics biology research using generative artificial intelligence tools while avoiding the pitfalls of hallucinations - Thomas Burger, CEA Grenoble |
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15:50 - 15:51 |
› Empirical simulation study for differential structure estimation of graphical models - Blanche Francheterre, Mathématiques et Informatique Appliquées |
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15:50 - 15:51 |
› Towards off-the-grid demultiplexing of LC-MS/MS data - Gowtham Sankarananth Seenivasaharagavan, GIPSA Pôle Géométrie, Apprentissage, Information et Algorithmes, CEA Grenoble |
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15:50 - 15:51 |
› Hierarchical Spatial Modeling of Hill-Based Soil Bacterial Diversity Across Sub-Saharan Africa Using MEM-Constrained Mixed Models - Anicet Ebou, Institut National Polytechnique Yamoussoukro |
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17:00 - 17:45
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Missing values and data generation (Amphi H of CLV) - Thomas Burger |
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17:00 - 17:30 |
› From Missing Intensities to Uncertainty: A Conjugate Bayesian Framework for Differential Proteomics - Marie Chion, University of Cambridge |
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17:30 - 17:45 |
› Nucleotide-level RNA-Seq data augmentation based on a variational Bayesian framework |
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